Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015907600.1_cds_XP_016457703.1_51398
CDS Infomation

[gene=LOC107781503] [db_xref=GeneID:107781503] [protein=putative tRNA pseudouridine synthase Pus10] [protein_id=XP_016457703.1] [location=join(14160..14297,19532..19923,20149..20269,20562..20676,21850..22013,22187..22258,23052..23120,23225..23305,23386..23505,23622..23696,23814..23894,24306..24379,24465..24525,25170..25225,26013..26097)] [gbkey=CDS]
Sequence

ATGGCCGGTGAAGTTGCGGCGGAAGTTAACAGCGTCGAGGGAAACATGCAGTTGAGTGAG
GAGGAGAACCTACGTCTCCTCCGCGAAGCCGTTAATGAGCTGCCGGTAAACGCCGTTAAA
GATTTGTGGTCCATTGGGGCATGCGTTCGATGCGTTTTTCGACTATTGGGACTTCGCGAA
CTCATGTGTTCACATCCTTCACTCTCAATATCAAAGTGGTGTGATATCTTAGAAGATGTA
ATGAGAAAAGAAGATGGTGACACGGCTGATCAGCCCCAAAAAGATGGAGAACTTAGTAAT
AAGCAATTGCATCAAGAACCATTAAAGGAGACAAACTTTTGCAAAATTTGCTTAGGCATT
TTGCAATTTCTCTATAATGATGACAATGGAACTTTATTGAAAAAAGATAGTGCCAATGAC
TTTGCTTTAGTAATTGCTGAACTCCTAAAGCAACAACATCACCAAATTGATAGTTTTTCT
CTTGAAGTCTCAGTACCTTCAGCTTTAGCAGAAACTGATCAAGCAGTCCGGTTGTATATG
AAAAATAGGTACCACCATGAACTTTGGTTCCAAGAAAAGGCTGAATGTCAATTCATTTCT
ACAAAAGACATCTTGAAATTGTTAGTGATAAATCCATTACAAAAATTGTTGGGTGTAAAA
TCTAGTCAAAGTTCTTTTCGCGTTCGCTTAACATACTCACATTCTGATGCATTAACAAGG
GATGATGTTCAGGAAAGGGCTGGAGGAAATAAGAGGAGGAAAACAGACAAAGCAGGTTTC
ACTGGTGACCTCAAGACAACTAAGGAATCTGTTACTCCCCATGTTGAGTCTTTTGATAAT
CATATTGGTGATGGAGATGGACTGATGAAACTTTGTCCCAAGGACTCCCAAGATCTCAGT
TGTAGTTACTTAATGGCTCAGTTAAATAAGGTCAGTAAGCCATGTTGTCTGACCATTCAT
TGCTGTAGAAGCCCTATATTTATTGGAGGAAGATATCTCAAGTATTCAAGAAATGTCAGC
CAGACGCGCTGGGTTATCGATGATGAAAGAATGGGAGAAGCATCTGTTGAGGAAATAGTA
GGCGGGGCCATCCTTCCTATCTTCCAGGGCGACAATTATAAGTTTCATGCTGCCGGTAGG
GAGGACATTGATGTCCGGATGCTGGGTACAGGCCGTCCTTTTCTGGTGGAGATACAAAAT
GCACGCCAAGTCCCTTCTGAAGTGCTCATAAAAGAGATAGAGAGGAAAATTAATAGTGTA
GAAAGTCGATTGGTCAGAGTTAAAAATCTTAGAGCTGTAGGTAGTCAAGGGTGGGACCTC
ATGCGTGAAGGAGAGGCGGAAAAGCAGAAGCAGTACACTGCATTGGTTTGGATTTCTCGT
CCTGTCAGCGACGAAGATTTGCAAACAATATCATCACTAAAGGAGTTGAAAGTCGCTCAA
AGAACACCTATAAGGGTTCTCCATCGCCGAAGTCCATTGGAGAGGGAGAAAATTATACAT
TGGATGAAAGTGGAGAGGATCTCTGGAAGCTCACAATATCTTCTACTGCATCTGTGTACT
CAGGCTGGGACATATATCAAGGAATTTGTTCATGGGGATTTTGGTCGCACCCAGCCCAGT
GTTGGTTCAATTCTTGGTTGCAGAACAGAGATATTGCAACTCGATGTTACAGACGTGAAA
ATGGACTGCTTTCAGGCAGAATGA

Peptide Sequence

PEP ID

XP_016457703.1
PEP Infomation

PREDICTED: putative tRNA pseudouridine synthase Pus10 [Nicotiana tabacum]
Sequence

MAGEVAAEVNSVEGNMQLSEEENLRLLREAVNELPVNAVKDLWSIGACVRCVFRLLGLRE
LMCSHPSLSISKWCDILEDVMRKEDGDTADQPQKDGELSNKQLHQEPLKETNFCKICLGI
LQFLYNDDNGTLLKKDSANDFALVIAELLKQQHHQIDSFSLEVSVPSALAETDQAVRLYM
KNRYHHELWFQEKAECQFISTKDILKLLVINPLQKLLGVKSSQSSFRVRLTYSHSDALTR
DDVQERAGGNKRRKTDKAGFTGDLKTTKESVTPHVESFDNHIGDGDGLMKLCPKDSQDLS
CSYLMAQLNKVSKPCCLTIHCCRSPIFIGGRYLKYSRNVSQTRWVIDDERMGEASVEEIV
GGAILPIFQGDNYKFHAAGREDIDVRMLGTGRPFLVEIQNARQVPSEVLIKEIERKINSV
ESRLVRVKNLRAVGSQGWDLMREGEAEKQKQYTALVWISRPVSDEDLQTISSLKELKVAQ
RTPIRVLHRRSPLEREKIIHWMKVERISGSSQYLLLHLCTQAGTYIKEFVHGDFGRTQPS
VGSILGCRTEILQLDVTDVKMDCFQAE

Transcript Sequence

Gene sequence data has not been registered.